PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MLOC_11732.2
Organism
Hordeum vulgare
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
Family NAC
Protein Properties Length: 343aa    MW: 38520.1 Da    PI: 5.2903
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MLOC_11732.2genomeIBSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM904.2e-28351781128
           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vi.kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tks 80 
                   lp G++F+Ptd el+  +L+ k+++      +  ++   +i ke +i++++P++Lp  vk +    +fF+k  ++y  g+rk+r+          ++
  MLOC_11732.2  35 LPIGVKFDPTDLELL-GHLEGKISRAVphvlI--DDfipTIgKEEGICYTHPENLP-GVKLDGIASHFFHKIGNAYDVGTRKRRKisnnyhtvcDER 127
                   699************.88*****999855442..223333414558**********.566677899******************8577776655447 PP

           NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrap...kgektdWvmheyrl 128
                    +W++tgk++++l+++g  +g kk++v+y g+++   k++kt+W mh+y+l
  MLOC_11732.2 128 LRWHKTGKSRSILDNNGVIKGWKKIMVLYMGSKKgggKTKKTNWRMHQYHL 178
                   77***************************776651225579********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3420197IPR003441NAC domain
PROSITE profilePS5100527.5935197IPR003441NAC domain
PfamPF023652.0E-1236178IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMIRNGELVA EAGMECPKCE HRIDNSDVSS QWPGLPIGVK FDPTDLELLG HLEGKISRAV  60
PHVLIDDFIP TIGKEEGICY THPENLPGVK LDGIASHFFH KIGNAYDVGT RKRRKISNNY  120
HTVCDERLRW HKTGKSRSIL DNNGVIKGWK KIMVLYMGSK KGGGKTKKTN WRMHQYHLGV  180
DEDEKDGELV VSKVFYQSES EKAGQPLIWC GNEEYDSFAG ENDPPTPMTY PPEPCRPNDS  240
PFETEQNQEE DEEFRQSAVR GAKEWLAGTT SHAVNDMALP GLDEHPSRGG TPDYPENSEK  300
QHLPLDAEEL QGFPDLGTSP HFSSLAGMKF DSLDGFHSWL KDM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3577630.0AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581357.21e-120PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK26e-69NAC8_ARATH; NAC domain-containing protein 8
TrEMBLM0UKC40.0M0UKC4_HORVD; Uncharacterized protein
TrEMBLF2D1K60.0F2D1K6_HORVD; Predicted protein
STRINGMLOC_11732.10.0(Hordeum vulgare)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.14e-65NAC family protein