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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MLOC_11732.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38520.1 Da PI: 5.2903 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 90 | 4.2e-28 | 35 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk....lelee...vi.kevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tks 80 lp G++F+Ptd el+ +L+ k+++ + ++ +i ke +i++++P++Lp vk + +fF+k ++y g+rk+r+ ++ MLOC_11732.2 35 LPIGVKFDPTDLELL-GHLEGKISRAVphvlI--DDfipTIgKEEGICYTHPENLP-GVKLDGIASHFFHKIGNAYDVGTRKRRKisnnyhtvcDER 127 699************.88*****999855442..223333414558**********.566677899******************8577776655447 PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrap...kgektdWvmheyrl 128 +W++tgk++++l+++g +g kk++v+y g+++ k++kt+W mh+y+l MLOC_11732.2 128 LRWHKTGKSRSILDNNGVIKGWKKIMVLYMGSKKgggKTKKTNWRMHQYHL 178 77***************************776651225579********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-34 | 20 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.59 | 35 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-12 | 36 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MMIRNGELVA EAGMECPKCE HRIDNSDVSS QWPGLPIGVK FDPTDLELLG HLEGKISRAV 60 PHVLIDDFIP TIGKEEGICY THPENLPGVK LDGIASHFFH KIGNAYDVGT RKRRKISNNY 120 HTVCDERLRW HKTGKSRSIL DNNGVIKGWK KIMVLYMGSK KGGGKTKKTN WRMHQYHLGV 180 DEDEKDGELV VSKVFYQSES EKAGQPLIWC GNEEYDSFAG ENDPPTPMTY PPEPCRPNDS 240 PFETEQNQEE DEEFRQSAVR GAKEWLAGTT SHAVNDMALP GLDEHPSRGG TPDYPENSEK 300 QHLPLDAEEL QGFPDLGTSP HFSSLAGMKF DSLDGFHSWL KDM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357763 | 0.0 | AK357763.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1061G08. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003581357.2 | 1e-120 | PREDICTED: NAC domain-containing protein 8-like | ||||
Swissprot | Q6NQK2 | 6e-69 | NAC8_ARATH; NAC domain-containing protein 8 | ||||
TrEMBL | M0UKC4 | 0.0 | M0UKC4_HORVD; Uncharacterized protein | ||||
TrEMBL | F2D1K6 | 0.0 | F2D1K6_HORVD; Predicted protein | ||||
STRING | MLOC_11732.1 | 0.0 | (Hordeum vulgare) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 4e-65 | NAC family protein |